Use filter chains to change analysis results

You can review the results of an Oncomine™ analysis run through a TagSeq analysis workflow, then apply different filter chains to alter the results.

  1. In the Analyses tab, click the link in the Analysis column to open an analysis of interest.

    The analysis results appear with the Oncomine™ Variants filter chain applied.

  2. (Optional) In the Filter Options pane, select a different filter chain from the list.

    Option

    Description

    Called Variants and Controls

    This is the default filter chain for the TagSeq analysis workflows. Use this filter chain for analysis results that report all variants (either hotspots or novel) that pass the filter and are not called as reference or NOCALL.

    Filter variant types include: SNV, INDEL, MNV, CNV, LONGDEL, FUSION, EXPR_CONTROL_ASSAYS_5P_3P, RNA_HOTSPOT, GENE_EXPRESSION, RNAExonVariant, ProcControl, and FLT3ITD.

    Called Hotspot Variants and Controls

    Select this filter chain for analysis results that report all hotspot variants that pass the filter and are not called as reference or NOCALL.

    Filter variant types include: SNP and INDEL.

    Variant Matrix Summary

    Select this filter chain for analysis results that generate a visualization that contains the same set of variants that are included in the Analysis Results table. This filter chain allows results to be exported. Import the exported results file into Oncomine™ Reporter (OKR) to include the variants shown in the Variant Matrix Summary view in OKR reports.

    Filter variant types include: SNV/INDEL, CNV, fusions, and RNAExonVariants.

  3. Review the results.