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Pub. No.   Rev.  A.0

23 October  2020  1:30:8.511



The information in this guide is subject to change without notice.

DISCLAIMER: TO THE EXTENT ALLOWED BY LAW, THERMO FISHER SCIENTIFIC INC. AND/OR ITS AFFILIATE(S) WILL NOT BE LIABLE FOR SPECIAL, INCIDENTAL, INDIRECT, PUNITIVE, MULTIPLE, OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR ARISING FROM THIS DOCUMENT, INCLUDING YOUR USE OF IT.

Translated from the English Publication Number MAN0019147 Rev. A.0.

Revision history: Pub. No. MAN0019147

Revision

Date

Description

A.0

22 October 2020

Updates made for new software features and improvements, and documentation improvements are as follows:
  • New screenshot in "View analysis workflow details" topic.

  • New topic to summarize guidelines for custom annotation resources: "Custom annotation sources".

  • New topic: "Apply a sequence variant baseline workflow preset to an analysis workflow".

  • Minimum and maximum number of samples updated in "Create a Sequence Variant Baseline workflow preset".

  • Procedure result added to "Import MyVariants".

  • Gene_deletions.xls file now available in downloaded variant files.

  • New section: "Adjust data and access clone details in spectratyping plots".

  • New immune repertoire examples: "IGK V-gene usage and mutation rate", "IGL V-gene usage and mutation rate", "TRG V-gene usage and mutation rate".

  • New topic: "Download spectratyping overview plots".

  • New section: "Novel fusion detection using expression imbalance".

  • "Detailed analysis metrics" table updated.

  • Information added about REFERENCE calls for hotspot alleles when a visualization is opened.

  • Updates to "View microbiome health research analysis results" and "Visualize microbiome health research analysis results" to reflect new Phylum level bar chart, and name change of Krona Plot view to Interactive Taxonomy View.

  • Information added for maximum of 500 aligned reads in each BAM track in Ion Reporter™ Genomic Viewer(IRGV).

  • Oncomine™ Variant Annotator plugin criteria appendix updated to reflect software updates.

  • IRGV tab renamed to "IRGV & Generate Report".

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