View and filter an amplicon coverage report
You can view an amplicon coverage report in Ion Reporter™ Software that shows which amplicons in an analysis do not have coverage. The report covers all bases to a user-defined coverage depth threshold. You can filter the list of amplicons that are shown in the report. The list is based on the threshold that you select and can adjust.
- In the Analyses tab, click Overview, then select row for the analysis of interest.
- Click .
In the Filter Options section, enter a Coverage Threshold value, for example 60, then click Filter. To save this threshold as the default for this mplicon coverage report, click Save.
Coverage Quality Control (QC) metric
- Click Export to generate a tab-separated CSV file that contains amplicon metrics details such as chromosome location, and start and end positions on forward and reverse strands.