View filter chain details

You can view the details of predefined and custom filter chains in Ion Reporter™ Software. For example, you can check whether the genome reference version is suited to your research. If it is not, you can build a new filter chain. Custom filter chains are created by combining filters to make a filter chain that meets your specific variant filtering needs.

  • When you plan your analysis workflow or create a workflow preset, you can view filter chain details from the Workflows Presets screen.
    1. Click Workflows, then click Presets.
    2. Select Filter Chains in the search filter category.
    3. Select the row that contains the filter chain of interest.
    4. In the Details pane, view the details.

    Option

    Description

    Version

    The software version when the filter was released.

    Reference

    The genome reference that is used in the filter chain.

    Last Modified By

    The person who last set or changed the filter chain settings.

    Last Modified On

    The date that the filter chain was last modified.

    Created By

    The person who created the filter chain.

    Created On

    The date that the filter chain was created.

    Filter Chains

    The list of other filter chains included in this filter chain and the order in which they are applied.

    Filter chain query applied

    The list of query settings that are applied to the filter chain.

  • When you refine analysis results, you can view filter chain details from the Analysis Results screen.
    1. Click Analyses, then click Overview.
    2. Select the link for the analysis of interest.
    3. In the Analysis Results screen, view the details of the filter chain that is applied to an analysis.

    Option

    Description

    Filter Chain

    The name of filter chain applied. A filter chain from the list may have been applied when the analysis workflow is launched, or applied to the completed analysis results.

    Total Variants

    The total number of variants that are detected in the analysis.

    Total Genes

    The total number of genes that are detected in the analysis.

    Filter chain details

    A description of the applied filters and their condition settings.

    Variants

    The number of variants that are filtered in or filtered out.

    Genes

    The number of genes that are filtered in or filtered out.