Download analysis information

This example uses curl commands to download information about a specific analysis. The output of the first curl command gives us URLs to use in later curl requests.

This curl command requests analysis information for an analysis named IR50_Rc10_Ane_BC18_DeganCases_1014_np:

curl --request GET -k -H "Authorization:ZTRhNWYyNjkzZjhlYjMxMTdmM2FkZGM1ZmQxYmRkNzU2ZTIxODk5OGRjZWM5ZDY2MjMzMTBiOGIwZWE5NmNlNg" "https://baseline.itw/api/v1/analysis?format=json&name=IR50_Rc10_Ane_BC18_DeganCases_1014_np"

The output is in JSON format:

 [
    {
        "reports": {
            "qc": {
                "link": "https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/download/pdf/98ccb759-010f-4c92-acba-2da2d8aa9f4d/ff8081815067ca42015068f99193000d_QC.pdf"
            },
            "final": {}
        },
        "report_published": "",
        "workflow": "Low-pass whole-genome aneuploidy",
        "data_links": {
            "filtered_variants": "https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/Ane_BC18_DeganCases/Ane_BC18_DeganCases_20151014174956618/IR50_Rc10_Ane_BC18_DeganCases_1014_np___4f776c35-4a9f-4a0f-a787-6ee28ebb8c7c.zip",
            "unfiltered_variants": "https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/Ane_BC18_DeganCases/Ane_BC18_DeganCases_20151014174956618/IR50_Rc10_Ane_BC18_DeganCases_1014_np.zip"
        },
        "variants_saved": "",
        "samples": {
            "PROBAND": "Ane_BC18_DeganCases"
        },
        "shared_with": [],
        "stage": "Send for Report Generation",
        "flagged": false,
        "name": "IR50_Rc10_Ane_BC18_DeganCases_1014_np",
        "id": "ff8081815067ca42015068f99193000d",
        "ion_reporter_version": "5.0",
        "started_by": "Ion User",
        "start_date": "October 14, 2015",
        "status": "SUCCESSFUL"
    }
]

This output contains links to three downloads about this analysis (backslashes have been removed):

  • qc: "https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/download/pdf/98ccb759-010f-4c92-acba-2da2d8aa9f4d/ff8081815067ca42015068f99193000d_QC.pdf"

  • unfiltered_variants:" https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/Ane_BC18_DeganCases/Ane_BC18_DeganCases_20151014174956618/IR50_Rc10_Ane_BC18_DeganCases_1014_np.zip"

  • filtered_variants: "https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/Ane_BC18_DeganCases/Ane_BC18_DeganCases_20151014174956618/IR50_Rc10_Ane_BC18_DeganCases_1014_np___4f776c35-4a9f-4a0f-a787-6ee28ebb8c7c.zip"

Take one of these links, remove the backslashes ('\'), and send this URL as the second curl command. Redirect the output to a file. For example, this command downloads the zipped filtered variants file:
curl --request GET -k -H "Authorization:ZTRhNWYyNjkzZjhlYjMxMTdmM2FkZGM1ZmQxYmRkNzU2ZTIxODk5OGRjZWM5ZDY2MjMzMTBiOGIwZWE5NmNlNg" -O "https://baseline.itw/api/v1/download?filepath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/Ane_BC18_DeganCases/Ane_BC18_DeganCases_20151014174956618/IR50_Rc10_Ane_BC18_DeganCases_1014_np___4f776c35-4a9f-4a0f-a787-6ee28ebb8c7c.zip"