CNV Somatic Confidence—CNVs Only filter

This filter can be added to filter chains in the software to make ploidy estimates with lower and upper confidence levels.

Filter conditions include the ability to enable and set the range for Minimum Ploidy Gain (5% CI) over expected, to enable and set the Minimum Ploidy Loss (95% CI) under expected ploidy values. In addition, the range boundary values can be included or excluded, and unannotated variants can be included or excluded in filtered analysis results.

The filter returns only somatic copy number variants within the lower and upper limits of the set confidence ranges.