Import panel files from AmpliSeq.com

You can import files for Ion AmpliSeq™ and Ion AmpliSeq™ HD Made-to-Order, On-Demand, or Ready-to-Use research panels from AmpliSeq.com into Ion Reporter™ Software during analysis workflow creation. For more information, see Ion AmpliSeq panel types.

Only ordered and quoted panel files are available for import into Ion Reporter™ Software.

You must have an access code to sign into AmpliSeq.com when you import custom panel files. For more information, see Generate an access code for AmpliSeq.com.
  1. In the Research Application step, select an appropriate research application and sample group for the panel, then click Next.
  2. In the Reference step, import a target regions file.

    Option

    Description

    Custom Panel

    1. Under Target Regions, click AmpliSeq Import.

    2. In the Import for AmpliSeq dialog box, select the Custom Panel tab for Ion AmpliSeq™ or Ion AmpliSeq™ HD Made-to-Order panel files, or Ion AmpliSeq™ On Demand panel files.

    3. Enter an account user name.
    4. In the Password field, enter the access code. For more information, see Generate an access code for AmpliSeq.com.

    5. Click List My AmpliSeq Panels.
    6. Select the panel files that you want to import from the dropdown list, then click Import.

    Fixed Panel

    1. Under Target Regions, click AmpliSeq Import.

    2. In the Import for AmpliSeq dialog box, select the Fixed Panel tab for Community or Ready-to-Use panel files.

    3. From the list, select the panel file that you want to import.

    4. Click Import.

  3. If the analysis includes fusions, you can import fusion panel files.

    Option

    Description

    Custom Panel

    1. Under Fusion Panel, click AmpliSeq Import.

    2. In the Import for AmpliSeq dialog box, select the Custom Panel tab for Ion AmpliSeq™ or Ion AmpliSeq™ HD Made-to-Order , or Ion AmpliSeq™ On Demand fusion panel files.

    3. Enter an account user name.
    4. In the Password field, enter the access code. For more information, see Generate an access code for AmpliSeq.com.

    5. Click List My AmpliSeq Panels.
    6. From the list, select the fusion panel file that you want to import, then click Import.

    Fixed Panel

    1. Click AmpliSeq Import under the Fusion Panel field.

    2. In theImport for AmpliSeq dialog box, select the Fixed Panel tab for Community or Ready-to-Use panel files.

    3. From the list, select the fusion panel file that you want to import.

    4. Click Import.

  4. Complete the remaining steps for analysis workflow creation.

    For more information, see Create a custom analysis workflow without predefined settings.

The target regions files and fusion panel files are added to the list of files that can be selected in the Reference workflow step.